PDB-wide identification of physiological hetero-oligomeric assemblies based on conserved quaternary structure geometry

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GROWTH AND ORGANIC OSMOLYTES OF GEOGRAPHICALLY DIFFERENT ISOLATES OF MICROCOLEUS CHTHONOPLASTES (CYANOBACTERIA) FROM BENTHIC MICROBIAL MATS:RESPONSE TO SALINITY CHANGE1

The comparative growth and osmotic acclimation often culture strains of the marine benthic cyanobacterium Microcoleus chthonoplastes Thuret isolated from microbial mats in Germany, Spain, Egypt, the United States, Mexico, Chile, and Australia were investigated in salinities ranging from freshwater to twice seawater. All isolates showed a broad growth versus salinity response consistent with the dominance of this species in intertidal and hypersaline microbial communities. Growth optima, salinity preferences, and maximum growth rates differed for each isolate and could be related to the habitat from which they were isolated. This is most obvious when comparing strains from brackish habitats with those from a hypersaline lake. While the former isolates exhibited sharply pronounced growth optima under hyposaline conditions, cultures from the hypersaline environment grew best in salinity more than double seawater. The major low-molecular weight organic compounds present in all M. chthonoplastes strains were the carbohydrates glycosylglycerol and trehalose. This was proven by using ¹³C-nuclear magnetic resonance spectroscopy. Glycosylglycerol was synthesized and accumulated with increasing salinities, indicating its role as an osmolyte. In contrast, trehalose was present in relatively high concentrations under hyposaline conditions only. Differences in the patterns of growth versus salinity, as well as in those of osmotic acclimation among the M. chthonoplastes isolates, point to the development of different physiological ecotypes within the species.     

Identification of heat shock protein gene expression in hair follicles as a novel indicator of heat stress in beef calves

Heat shock proteins (HSPs) consist of highly preserved stress proteins that are expressed in response to stress. Two studies were carried out to investigate whether HSP genes in hair follicles from beef calves can be suggested as indicators of heat stress (HS). In study 1, hair follicles were harvested from three male Hanwoo calves (aged 172.2 ± 7.20 days) on six dates over the period of 10 April to 9 August 2017. These days provided varying temperature–humidity indices (THIs). In study 2, 16 Hanwoo male calves (aged 169.6 ± 4.60 days, with a BW of 136.9 ± 6.23 kg) were maintained (4 calves per experiment) in environmentally controlled chambers. A completely randomized design with a 2 × 4 factorial arrangement involving two periods (thermoneutral: TN; HS) and four THI treatment groups (threshold: THI = 68 to 70; mild: THI = 74 to 76; moderate THI = 81 to 83; severe: THI = 88 to 90). The calves in the different group were subjected to ambient temperature (22°C) for 7 days (TN) and subsequently to the temperature and humidity corresponding to the target THI level for 21 days (HS). Every three days (at 1400 h) during both the TN and HS periods, the heart rate (HR) and rectal temperature (RT) of each individual were measured, and hair follicles were subsequently collected from the tails of each individual. In study 1, the high variation (P < 0.0001) in THI indicated that the external environment influenced the HS to different extents. The expression levels of the HSP70 and HSP90 genes at the high-THI level were higher (P = 0.0120, P = 0.0002) than those at the low-THI level. In study 2, no differences in the THI (P = 0.2638), HR (P = 0.2181) or RT (P = 0.3846) were found among the groups during the TN period, whereas differences in these indices (P < 0.0001, P < 0.0001 and P < 0.0001, respectively) were observed during the HS period. The expression levels of the HSP70 (P = 0.0010, moderate; P = 0.0065, severe) and HSP90 (P = 0.0040, severe) genes were increased after rapid exposure to heat-stress conditions (moderate and severe levels). We conclude that HSP gene expression in hair follicles provides precise and accurate data for evaluating HS and can be considered a novel indicator of HS in Hanwoo calves maintained in both external and climatic chambers.     

亏缺灌溉对板蓝根叶片光合生理特性及产量的影响

以北板蓝根(Isatis tinctoria)为研究对象, 于2018年在河西走廊中部干旱绿洲开展水分控制试验, 设轻、中、重度亏水及充分供水4个控水水平, 通过大田试验探究膜下滴灌条件下亏缺灌溉对板蓝根叶片生理指标、灌水量及产量的影响, 为河西地区板蓝根灌溉策略的制定提供理论依据。结果表明, 板蓝根叶片净光合速率(P_n)、蒸腾速率(T_r)和气孔导度(G_s)因营养和肉质根生长期受到亏缺灌溉影响而显著下降, 降幅随亏水程度的加剧而增大, 轻度亏水处理对叶片光合能力的影响不显著, 且在复水之后存在一定的补偿响应; 轻度亏水处理的产量与对照(8 348.91 kg·hm^-2)相比无显著差异, 而其它处理的产量均有不同程度的下降; 灌水量与产量的拟合关系呈二次抛物线, 即产量不随灌水量的增加而升高。因此, 综合分析表明膜下滴灌调亏降低了板蓝根叶片的光合能力, 而营养生长期轻度亏缺灌溉可以节水并提高产量和灌溉效率。     

Characterization and antioxidant activity of an exopolysaccharide produced by Leuconostoc pseudomesenteroides JF17 from juçara fruits (Euterpe edulis Martius)

Juçara palm tree is considered an important species in the Atlantic forest ecosystem and the exploitation of its fruits is a main sustainable strategy adopted to its maintenance. Among several microorganisms in the juçara fruits, were found lactic acid bacteria (LAB) highly capable of synthesizing exopolysaccharides (EPS). Thus, the EPS synthesized by Leuconostoc pseudomesenteroides JF17 was characterized according to its chemical structure, physicochemical properties and antioxidant activity. HPLC analysis showed that the EPS consisted of a homopolysaccharide composed of glucose units, FT-IR spectroscopy revealed a dextran, confirmed by ¹H and ¹³C NMR spectra which showed the composition of the polysaccharide, d-glucose units bound by α-(1→6). The EPS showed high water retention capacity, 507.812 ± 47.471 %, and may be related to the porous structure revealed by SEM images. Thermal analysis indicated that the EPS had excellent thermal stability with degradation temperature of 320.8 °C and melting point at 279.81 °C, with the enthalpy of 106.557 J/g. The EPS also presented sequestration ability on different free radicals tested, indicating high antioxidant activity. The results suggest that L. pseudomesenteroides JF17 might be widely used in the production of dextran which has potential qualities for applications in the food industry.     

Early vigour in wheat: Could it lead to more severe terminal drought stress under elevated atmospheric [CO2] and semi‐arid conditions?

Early vigour in wheat is a trait that has received attention for its benefits reducing evaporation from the soil surface early in the season. However, with the growth enhancement common to crops grown under elevated atmospheric CO₂ concentrations (e[CO₂]), there is a risk that too much early growth might deplete soil water and lead to more severe terminal drought stress in environments where production relies on stored soil water content. If this is the case, the incorporation of such a trait in wheat breeding programmes might have unintended negative consequences in the future, especially in dry years. We used selected data from cultivars with proven expression of high and low early vigour from the Australian Grains Free Air CO₂ Enrichment (AGFACE) facility, and complemented this analysis with simulation results from two crop growth models which differ in the modelling of leaf area development and crop water use. Grain yield responses to e[CO₂] were lower in the high early vigour group compared to the low early vigour group, and although these differences were not significant, they were corroborated by simulation model results. However, the simulated lower response with high early vigour lines was not caused by an earlier or greater depletion of soil water under e[CO₂] and the mechanisms responsible appear to be related to an earlier saturation of the radiation intercepted. Whether this is the case in the field needs to be further investigated. In addition, there was some evidence that the timing of the drought stress during crop growth influenced the effect of e[CO₂] regardless of the early vigour trait. There is a need for FACE investigations of the value of traits for drought adaptation to be conducted under more severe drought conditions and variable timing of drought stress, a risky but necessary endeavour.     

Quantifying impacts of plastic debris on marine wildlife identifies ecological breakpoints

Quantifying sublethal effects of plastics ingestion on marine wildlife is difficult, but key to understanding the ontogeny and population dynamics of affected species. We developed a method that overcomes the difficulties by modelling individual ontogeny under reduced energy intake and expenditure caused by debris ingestion. The predicted ontogeny is combined with a population dynamics model to identify ecological breakpoints: cessation of reproduction or negative population growth. Exemplifying this approach on loggerhead turtles, we find that between 3% and 25% of plastics in digestive contents causes a 2.5–20% reduction in perceived food abundance and total available energy, resulting in a 10–15% lower condition index and 10% to 88% lower total seasonal reproductive output compared to unaffected turtles. The reported plastics ingestion is insufficient to impede sexual maturation, but population declines are possible. The method is readily applicable to other species impacted by debris ingestion.     

基于景观尺度下的鄱阳湖湿地浅层土有机碳的空间特征

湿地土壤有机碳研究是全球碳循环研究的基础性工作, 对于准确评估湿地固碳增汇和全球温室气体减排都具有重要意义。以鄱阳湖国家自然保护区为研究区域, 选择六种景观类型(湿地洲滩景观包括受人工控制的碟形湖泊常湖池、半人工控制的碟形湖泊蚌湖、不受人工控制的洲滩前缘泗洲头以及岗地景观包括林地、田地和菜地), 湿地洲滩景观在各1 m高程(泗洲头和蚌湖采样高程10-17 m, 常湖池采样高程12-17 m)内的浅土壤采取3个土壤样品, 岗地景观浅层土壤各采取3个土壤样品, 分析浅层土壤有机碳含量。结果表明, 鄱阳湖不同景观类型的浅层土壤有机碳含量差异性显著。湿地洲滩浅层土壤(特别是0-10 cm土层)的有机碳随高程梯度变化呈现倒U型变化, 即低海拔与高海拔土壤有机碳的含量较中海拔土壤有机碳的含量低, 泗洲头洲滩土层0-10 cm的有机碳含量最高值出现在13-14 m高程, 其中0-10 cm土层的土壤有机碳含量变化值为1.56-12.29 g·kg-1, 10-20 cm土层的土壤有机碳含量变化值为0.96-8.19 g·kg-1; 蚌湖洲滩土层0-10 cm的有机碳含量最高值出现在14-15 m高程, 其中0-10 cm土层的土壤有机碳含量变化值为6.36-23.32 g·kg-1, 10-20 cm土层的土壤有机碳含量变化值为4.14-8.88 g·kg-1; 常湖池洲滩土层0-10 cm的有机碳含量最高值出现在16-17 m高程, 其中0-10 cm土层的土壤有机碳含量变化值为6.51-18.91 g·kg-1, 10-20 cm土层的土壤有机碳含量变化值为3.83-10.05 g·kg-1。岗地浅层土壤有机碳(特别是0-10 cm土层)田地的土壤有机碳含量最高, 菜地土壤有机碳含量最低。比较六种景观类型的浅层土壤有机碳含量, 泗洲头洲滩浅层土壤有机碳含量最低, 蚌湖洲滩浅层土壤有机碳含量最高。六种景观类型的浅层土壤有机碳含量呈现一致的现象是土层0-10 cm的机碳含量明显高于土层10-20 cm的有机碳含量, 说明鄱阳湖国家自然保护区内土壤有机碳含量主要富集在土壤浅层的特征。土壤pH值对湿地土壤有机碳呈显著负相关性, 而土壤含水量、地上部分生物量与土壤有机碳呈显著正相关性。     

Incorporating physiology into species distribution models moderates the projected impact of warming on selected Mediterranean marine species

Species distribution models (SDMs) correlate species occurrences with environmental predictors, and can be used to forecast distributions under future climates. SDMs have been criticized for not explicitly including the physiological processes underlying the species response to the environment. Recently, new methods have been suggested to combine SDMs with physiological estimates of performance (physiology-SDMs). In this study, we compare SDM and physiology-SDM predictions for select marine species in the Mediterranean Sea, a region subjected to exceptionally rapid climate change. We focused on six species and created physiology-SDMs that incorporate physiological thermal performance curves from experimental data with species occurrence records. We then contrasted projections of SDMs and physiology-SDMs under future climate (year 2100) for the entire Mediterranean Sea, and particularly the ‘warm’ trailing edge in the Levant region. Across the Mediterranean, we found cross-validation model performance to be similar for regular SDMs and physiology-SDMs. However, we also show that for around half the species the physiology-SDMs substantially outperform regular SDM in the warm Levant. Moreover, for all species the uncertainty associated with the coefficients estimated from the physiology-SDMs were much lower than in the regular SDMs. Under future climate, we find that both SDMs and physiology-SDMs showed similar patterns, with species predicted to shift their distribution north-west in accordance with warming sea temperatures. However, for the physiology-SDMs predicted distributional changes are more moderate than those predicted by regular SDMs. We conclude, that while physiology-SDM predictions generally agree with the regular SDMs, incorporation of the physiological data led to less extreme range shift forecasts. The results suggest that climate-induced range shifts may be less drastic than previously predicted, and thus most species are unlikely to completely disappear with warming climate. Taken together, the findings emphasize that physiological experimental data can provide valuable supplemental information to predict range shifts of marine species.     

长春花(Catharanthus roseus)对热带珊瑚岛生理生态适应性研究

长春花(Catharanthus roseus)是夹竹桃科的一种亚灌木植物,具有重要的药用价值和观赏价值,在前期的试验性种植中,发现长春花对热带珊瑚岛环境有很强的适应性。为了探讨长春花对热带珊瑚岛环境的生理生态适应性,该文以移植到热带珊瑚岛的长春花和生长于海南省文昌市苗圃的长春花为研究对象,对其叶片的形态解剖结构、生理学特征、营养元素含量等进行了分析。结果表明:(1)与苗圃生长的长春花和其他耐胁迫的植物相比,移植到热带珊瑚岛上的长春花具有叶片厚、栅栏组织发达、比叶面积小等形态解剖特征,这些特征有利于其光能吸收、水分储存和对环境资源的利用。(2)长春花的超氧化物歧化酶(SOD)、过氧化物酶(POD)和过氧化氢酶(CAT)活性较高,表现出较强的抗氧化性和抗胁迫能力。(3)长春花的叶绿素a和叶绿素b含量较低,可以减少过多的光能进入叶绿体光合系统,防止过剩的光能对光合系统产生伤害。(4)热带珊瑚岛土壤养分含量低,但生长在岛上的长春花叶片的营养元素含量高,表现出很强的养分吸收和利用能力。因此,长春花对干旱、贫瘠等恶劣生境具有很好的适应能力,可以作为热带珊瑚岛植被恢复工具种。